Grade 12 ↓
Proteins (Structure and Function)
Proteins are large, complex molecules that play many important roles in living organisms. They are essential components of all living cells, and are involved in nearly every process within biological systems. Understanding the structure and function of proteins is fundamental in the fields of chemistry, biology, and medicine.
1. What are proteins?
Proteins are biomolecules composed of amino acid chains. These chains are folded into specific three-dimensional structures that determine the protein's function. Proteins are known for their versatility, contributing to structural integrity, transport, metabolism, regulation, and catalysis in cells.
2. Basic structure of proteins
The basic structure of a protein can be described at different levels:
2.1 Primary structure
The primary structure of a protein is its unique sequence of amino acids. This sequence is determined by genetic information encoded in DNA. Amino acids are linked by peptide bonds to form a polypeptide chain.
HOOC-CHR-NH2 | | Amino Carboxyl Group Group
Example: The primary structure of a protein may look like the following simplified form:
Glycine-Valine-Alanine-Leucine
2.2 Secondary structure
The secondary structure of proteins refers to the local folded structures that form within the polypeptide due to interactions between the backbone atoms. The most common secondary structures are the alpha helix and the beta pleated sheet.
Alpha Helix: This structure is a right-handed coil where each backbone -NH
group four amino acids ago forms a hydrogen bond with the backbone -C=O
group.
Turns of the helix ////////
Beta pleated sheet: In this structure, two or more segments of the polypeptide chain line up next to each other, forming a sheet-like structure by hydrogen bonds.
Interconnected chains ||||||||||||
2.3 Tertiary structure
Tertiary structure is the overall three-dimensional structure of a single protein molecule. The spatial arrangement is stabilized by various interactions, including hydrogen bonds, disulfide bonds, ionic interactions, and hydrophobic packing.
Interactions include:
- Hydrogen bond - a weak bond between an electronegative atom and a hydrogen atom bonded to another electronegative atom.
- Disulfide bonds - strong covalent bonds formed between two sulfur atoms of cysteine residues.
- Ionic interactions - attraction between oppositely charged side chains.
- Hydrophobic interactions - nonpolar side chains group away from water.
2.4 Quaternary structure
Quaternary structure refers to the assembly of several polypeptide chains into a functional protein complex. Each peptide chain is called a subunit. For example, hemoglobin has a quaternary structure consisting of four subunits.
Subunit structure _______ _______ | | | | | Sub1 | | Sub2 | |_______| |_______| _______ _______ | | | | | Sub3 | | Sub4 | |_______| |_______|
3. Functions of proteins
Proteins perform a variety of functions in biological organisms. Here are some of the main functions:
3.1 Structural proteins
These proteins provide support and shape to cells. An example is collagen, which is found in skin, bones, and connective tissue. Another example is keratin, which is found in hair and nails.
3.2 Enzymes
Enzymes are proteins that act as biological catalysts. They speed up chemical reactions that occur in the body without being consumed in the process. For example, amylase is an enzyme that helps digest carbohydrates.
3.3 Transport proteins
Transport proteins are involved in the movement of substances across the cell membrane. Hemoglobin is a transport protein that carries oxygen in the blood.
3.4 Hormonal proteins
Hormones are regulatory proteins that control various bodily functions. Insulin is a hormone that regulates blood sugar levels.
3.5 Defense proteins
These proteins are involved in defending the body against germs. Antibodies are proteins that recognize and neutralize foreign invaders such as bacteria and viruses.
3.6 Receptor proteins
Receptor proteins are located in the cell membrane and allow cells to communicate with their external environment. They bind signaling molecules such as hormones or neurotransmitters, thereby initiating a cellular response.
4. Importance of protein structure to its function
The function of a protein is directly related to its structure. Changes in protein structure, whether caused by genetic mutations or environmental factors (such as changes in pH or temperature), can lead to loss of function or an increase in unintended functions. This is why maintaining the proper structure of proteins is critical for them to effectively perform their biological role.
For example, primary structure determines the shape and function of a protein through the specific order of amino acids. Secondary and tertiary structures contribute to the overall shape and stability, ensuring that the protein can properly interact with other molecules. Quaternary structures allow for complex interactions and cooperativity between subunits in multi-subunit proteins.
5. Conclusion
Proteins are indispensable molecules that are critical for the structure, function, and regulation of the body's tissues and organs. Understanding the hierarchical structure of proteins from the elementary to the quaternary levels helps to elucidate their diverse roles in biological systems. Every level of protein structure is critical for the ultimate functionality of the protein. As fundamental building blocks, they underlie the complexity and sophistication of biological machinery.